Wednesday, December 12, 2012

EuroSurveillance: Assays for laboratory confirmation of novel human coronavirus (hCoV-EMC) infections

Eurosurveillance, Volume 17, Issue 49, 06 December 2012

We present a rigorously validated and highly sensitive confirmatory real-time RT-PCR assay (1A assay) that can be used in combination with the previously reported upE assay. Two additional RT-PCR assays for sequencing are described, targeting the RdRp gene (RdRpSeq assay) and N gene (NSeq assay), where an insertion/deletion polymorphism might exist among different hCoV-EMC strains. Finally, a simplified and biologically safe protocol for detection of antibody response by immunofluorescence microscopy was developed using convalescent patient serum. 

Full Document:  http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId=20334

  1. Institute of Virology, University of Bonn Medical Centre, Bonn, Germany
  2. These authors contributed equally to this work
  3. Ruhrlandklinik, University of Duisburg-Essen, Essen, Germany
  4. Institute of Virology, University of Duisburg-Essen, Essen, Germany
  5. Robert Koch Institute, Berlin, Germany
  6. Euroimmun AG, Lübeck, Germany
  7. TibMolbiol, Berlin, Germany
  8. Virosciences Laboratory, Erasmus MC, Rotterdam, the Netherlands

Nature: Clusters of coronavirus cases put scientists on alert

  • Nature 492, 166–167
  • ()
  • doi:10.1038/492166a
  • Declan Butler

  • Excerpt [editing is mine]:
     Is the coronavirus that has appeared in the Middle East a simmering threat to global public health or a viral footnote that will end up being of interest only to academics? That is the key question that researchers and public-health officials are now struggling to resolve. Two unsettling developments have fed their concerns: fresh hints that the virus might show at least limited spread from person to person, and signs that it has extended its geographical range.
    -snip-
    “It’s an extremely serious disease; it’s very much in the category of H5N1 [avian influenza],” says David Heymann, chairman of the UK Health Protection Agency and former head of the communicable-diseases programme at the WHO during the 2003 SARS epidemic, caused by a different coronavirus. Yet this latest coronavirus is still limited to the Middle East and shows no sign of spreading easily between people, Heymann emphasizes.

    In late November, however, the WHO reported a household cluster of four cases in Saudi Arabia, in which two people died. Retro­spective tests looking for the coronavirus in samples from a cluster of 11 people who were admitted with serious respiratory symptoms to a hospital in Jordan in April have revealed the virus in another two fatal cases. This pushes back the first known date of its emergence by several months and marks the first evidence for infection outside Saudi Arabia and Qatar.

    Although independent infections from the same animal or environmental source might explain these outbreaks, such clusters always raise the possibility of transmission between humans. Because the disease did not spread any further, however, person-to-person transmission of the virus — if it occurred at all — would have had to have been through close contact. Still, the extension of the disease to Jordan, and the identification of these earlier cases, marks a significant epidemiological development and suggests that infections may have gone undetected in other countries.

    What is needed now, says Heymann, is “good old shoe-leather epidemiology; that’s what worked in SARS”. Epidemiologists need to talk to the families and neighbours of any infected people; try to track down everyone who has come into contact with them to look for symptoms and test for the virus; and isolate infected people to try to stop any spread.

    http://www.nature.com/news/clusters-of-coronavirus-cases-put-scientists-on-alert-1.12006

    New coronavirus can infect cells from multiple species

    CIDRAP
    Dec 11, 2012 (CIDRAP News) – Experiments on the novel coronavirus that has infected patients from three Middle Eastern countries show that the receptor it uses to infect human cells is different from the one used by its relative the SARS virus and that it can infect cells from a range of animals, according to a study released today.
    Both findings have implications for public health, as experts rush to assess the threat and develop tools to battle the emerging virus, which has so far led infected at least 9 people, causing 5 deaths, in Saudi Arabia, Qatar, and Jordan. The study was conducted by researchers from Germany and the Netherlands and appears today in mBio, the online journal of the American Society for Microbiology (ASM).
    The virus, called hCoV-EMC, has been linked to two illness clusters, including one that involved healthcare workers at a Jordanian hospital. All of the patients with confirmed infections had pneumonia, and several had severe renal complications.
    The European Centre for Disease Prevention and Control (ECDC) said recently that though the case clusters raise the possibility of human-to-human transmission, so far there is too little information to confirm or rule it out. Regardless, concerns about transmission risk have prompted intensive monitoring of close contacts of case-patients and reminders about steps to protect healthcare workers.
    Christian Drosten, MD, lead author of the study and director of the Institute of Virology at the University of Bonn Medical Centre in Germany, said in an ASM press release today, "This virus is closely related to the SARS virus, and looking at the clinical picture, it causes the same pattern of disease."
    One question the research team wanted to explore was whether the hCoV-EMC and SARS viruses use the same receptor to enter human cells. The SARS virus uses the angiotensin-converting enzyme 2 (ACE2) receptor, which is mainly found on pneumocytes deep in human lungs. Drosten said individuals needed to inhale great numbers of SARS viruses for enough to reach deep into the lungs and take root, a factor that limited its spread mainly to healthcare workers and people who lived in overcrowded housing in Hong Kong.
    The researchers found that hCoV-EMC clearly does not use ACE2, Drosten said in the press release But the virus could use another, still-unknown receptor in human lungs that is easier to access and could make the virus more infectious than SARS, he added.
    In the second part of the study, the group conducted a set of experiments to shed light on how the virus might have originated and moved between humans and animals. Genetic sequencing of an hCoV-EMC sample from a Saudi man who died in June showed that the virus most closely resembles coronaviruses found in bats. Some of the patients with confirmed infections had visited farms before they got sick.
    Drosten said the SARS virus changed after it jumped from bats to civets to humans, rendering it unable to infect bats again. However, he said researchers were surprised to see that hCoV-EMC can infect cells from many different species. The group found that it could enter cells from four major bat families, pigs, and primates. "It's completely unusual for any coronavirus to be able to do that—to go back to its original reservoir," he said.
    The team reported that the findings suggests all the animals could share a common receptor, and if the receptor is present on mucosal surfaces such as the lining of the lung, the virus could pass back and forth between animals and humans, making it difficult or even impossible to eliminate.
    Drosten said his lab is still trying to identify the hCoV-EMC receptor and that more work on the virus is under way at many other hospitals and labs.
    Kathryn Holmes, PhD, professor emerita in the University of Colorado School of Medicine's Department of Microbiology, told CIDRAP News that the group's findings are exciting news. She is a coronavirus expert whose work has focused on characterizing receptors for several coronaviruses.
    She said there are several different receptor proteins for coronaviruses and it will be interesting to see what the receptor or receptors are for the new coronavirus. It's not possible, she added, to predict the receptor solely from the genetic sequence of the virus' spike protein, the glycoprotein that mediates its entry into host cells.
    The discovery that the virus grows well in multiple species without adaptation is important, but it does not necessarily predict whether each of the species is sickened by the virus, she said.
    Scientists have a lot of questions to answer about the new virus, such as its tissue tropism, virulence mechanism, and transmission routes, Holmes said, adding, "It is amazing how quickly data from this newly discovered virus is flowing from many labs."
    Rapid identification of reservoir hosts, routes of transmissions, and virulence determinants in different hosts will help reduce human contact with potential animal reservoirs, and sensitive assays to detect viral RNA and proteins are being developed and used to analyze the epidemiology of the virus in humans and animals, Holmes said.
    She said the virus has apparently been discovered before any widespread in humans, and current research will establish assays to allow health officials to rapidly evaluate any potential spread of the new virus to new hosts or different regions or from human to human.
    Muller MA, Raj VS, Muth D, et al. Human coronavirus EMC does not require the SARS-coronavirus receptor and maintains broad replicative capability in mammalian cell lines. mBio 2012 Dec 11 [Abstract]
    See also:
    Dec 11 ASM press release

    Tuesday, December 11, 2012

    Study finds puzzling behaviour of new coronavirus, may hint at pattern of spread

    By Helen Branswell, The Canadian Press | Associated Press – 19 hrs ago

    TORONTO - A new study reveals that the new SARS-like virus which has been causing infections in the Middle East behaves unusually in laboratory testing.
    The unexpected behaviour of the virus may help to explain the pattern of spread of the cases so far, says senior author Christian Drosten, a leading coronavirus expert.
    In essence, the new coronavirus is promiscuous, a term the virologists who authored the study use to describe the fact that it will grow in a variety of different types of animal cells, including cells from people, pigs and several species of bats.



    Continued:  http://news.yahoo.com/study-finds-puzzling-behaviour-coronavirus-may-hint-pattern-050943504.html

    Vietnam: Identifying Chicken: Harm from eating chicken antibiotic residues

    11/12/2012 By  

    Facing the chicken waste and residual smuggled chickens antibiotics exceeds the permitted level, Dr. Nguyen Huu Doan, Deputy Director of Department of Animal Husbandry and Aquaculture, Hanoi University of Agriculture has analysis and guide people to identify this bird.
    Chicken waste, mine usually truncated
    According to Dr. Nguyen Huu Doan, to meet market demand for eggs for the world as well as in our country, the farm are super chicken eggs with chicken in common is a relatively small body. This approach is similar to chicken curry aimed less and can feed chickens with high density, due to the cage. Ragged feathers are usually brown due to too old. Brown shell, high egg production. According to the calculations, each hen lays 280 - 300 eggs. Each egg weighs 55 - 65g, while ri eggs of our country only 40 - 45g/qua .
    Super chicken eggs usually beaked penguin by surgical cut to them from biting. Chicken lips this type consists of two phases: chicken and gilts (prepared childbirth) lasted for about 4.5 months, hens have time 13 - 14 months. Thus, life super chicken eggs lasts about one and a half years, while the super chicken meat, it is only about 1.5 months, chickens backyard coat is 3 months, the chicken about 4 - 5 months .
    In addition to these factors, Dr. Nguyen Huu Doan said, in life super chicken eggs, after hatching until it is condemned, farmers injected 12 - 15 times the vaccine types in the chicken. This is to prevent the disease is mainly caused by the virus (virus) causes such as avian flu (H5N1), translated Coliza, reduced tongue syndrome, also called chicken cholera RU (newcastle); gumboro; beans; chicken toi (fowl) .. .
    In addition, to prevent diseases caused by bacteria , monthly, or even weekly, one has to feed the chickens antibiotics periodically. In particular, the list of banned antibiotics toxic to pets and humans. Sometimes chickens get sick, we also inject antibiotics directly into the chicken breast. All the above vaccines and antibiotics are not excreted out from the body hen that accumulates gradually, until condemned in the body too much chicken and antibiotic residues .
    Can easily create drug-resistant organisms
    Information from the Department of Animal Health announced recently showed that 40% of the sample layer culling smuggled Chinese antibiotic residues exceeding the permitted level. According to Dr. Nguyen Huu Doan, this is also the cause of the countries in the world not to eat chickens laying waste types that only allow processed into feed for cattle, dogs, cats .. .
    When eating chicken antibiotic residues will definitely harm to consumers. In particular, some consumers are allergic. If you eat a variety of meat, the human body can generate drug-resistant microorganisms, oily antibiotics should they cause human disease is very difficult to treat. At the same time, eating chicken antibiotics also reduce the immune response of the body, causing the body to gradually become weak, reducing the resistance. These people can not live without antibiotics. Even some antibiotics can cause cancer for consumers .
    Only eat chicken waste, new antibiotics have adverse impacts on consumers. However, to the naked eye as well as by the ordinary senses such as color, smell, taste ... consumers can not detect antibiotic residues in chicken. To detect the level of residues of antibiotics need to use modern machinery and equipment in the laboratory .
    Dr. Nguyen Huu Doan

    Vietnam: Dak Lak Reappears Avian Influenza #H5N1

    12/12/12  

    Cu M'gar district implement preventive measures against H5N1 Currently, a number of localities in the province of Dak Lak has reappeared and spread of H5N1 avian influenza. The aim of the prevention of bird flu in the district in the future, especially during the before, during and after the Chinese New Year Snake You - DPC CuMgar has directed the local districts implement effective urgent H5N1 avian-flu.

     UBND huyện CưMgarhas directed the social-town steering strengthen the anti-epidemic preparedness resources and forces to deal quickly and thoroughly when epidemics occur.

    At the same time implementing measures to monitor the situation of poultry in residential areas, advocating for farmers to strictly work hygiene, care, nurture, disinfected cages, restrict the import of poultry and of unknown origin.

    At the same time strengthen the control does not enter the duck on local grazing poultry run. For farms with bird number 100 or more must be self-sufficient and registration flu vaccine poultry vaccination for veterinary prescribed, determined the requirements of the poultry vaccination must sign a commitment as prescribed to prevent-H5N1 epidemic control.  
    Particularly the case with the the H5N1 facilities like: continuous high fever, chills, shortness of breath, chest pain, headaches, muscle pain, hand-foot-back ... must be taken immediately to the base medical examination and treatment time. /.

    http://cumgar.daklak.gov.vn/index.php?option=com_content&task=view&id=5063&Itemid=196

    China Discards Chicken Waste: Hens/Chickens/Roosters @ Certain Age, Vietnam Smuggles Them In, High Rates of Antibiotic Residues Unhealthy

    12/12/12

    8 million Chinese chicken waste in Vietnam

    (People of India) - Yesterday morning (11:12), the Ministry of Industry and Trade has officially announced, at least 8 million chickens disposal China are smuggled into Vietnam this year.


    As reported by the Ministry of Industry and Trade, through fact-finding shows that in China (Chinese), discarded chicken is chicken feed to a certain age, not standard, farmers removed. The chicken waste types include: hens, chickens, roosters.
    Classification of smuggled chickens at the market Ha Vy (Hanoi).
    According to this report, the local supply and consumption of chicken waste in China is largely in the provinces: Liaoning, Jilin, Heilongjiang, Hebei, Henan, Shandong, Jiangsu, Hubei ... Findings also showed that Chinese chickens waste sent to Vietnam were classified as chicken egg exhaustion, have high rates of antibiotic residues and are often excluded from the food products , must be destroyed. Therefore, the selling price of this type of waste chicken to the Vietnamese border at 10,000 VND / kg. 

    According to the test results of the Ministry of Agriculture and Rural Development, 60% of chicken samples discarded from China with avian influenza virus and the Ministry of Health tests also showed that 100% of samples with antibiotic residues exceed the permitted level, causing harmful to the health of consumers. 

     "Yes, the Chinese products are required to be destroyed, or processed animal feed, but in the process brought for burial, a number of Vietnamese traders had purchased at an average price of about 15,000 VND / kg and fell to the domestic consumption of 50,000 to 70,000 VND / kg "- the report of the Ministry of Industry and Trade gradually a source said.
    According to Deputy Minister of Industry and Trade Nguyen Cam Tu, the import, transport and trading of smuggled poultry is causing a negative impact on the health of people by the amount of antibiotics and other chemical residues are high excessive; very high risk of disease spread; destroy the poultry production business in the country; cause tax losses.

    Vietnam: Cracking Down on the Importing of Chicken from China

    ...and China currently bans poultry from Vietnam.  Go figure.

    12/12/12

    From the root to control super cheap chicken is no longer on the market
    (T.Vy (general) - Source: VNA - 12/11/2012)
    Ministry of Agriculture and Rural Development (MARD) is coordinating with the relevant agencies such as: the Ministry of Public Security, the Ministry of Industry and Trade, Customs ... on the to prevent, control and treat the root condition chicken super cheap China spill into the Vietnamese market.

    Deputy Minister of Agriculture and Rural Development Diep Kinh Tan said: The use of chicken China is very dangerous, not only affect the health of consumers as chicken filled in the Vietnam market today are chicken discarded or chicken was too time term use ... but also increase the risk of spread of avian flu by current avian influenza situation in China is very serious and continues to spread.
    Deputy Minister Diep Kinh Tan said: At present, according to the Ministry of Agriculture and Rural Development, Chinese chicken into Vietnam mainly through Lang Son and Mong Cai border gate. Chinese chicken appears in the consumer market is very difficult to distinguish. Therefore, the authorities should take measures positive and eliminate the recruiter then hope to be able to handle the root condition. However, the question is why China banned meat products from Vietnam, Vietnamese products can not enter the Chinese market but Vietnam bans chicken products imported from China that chicken products are still in the domestic market. Through this, the authorities should study and consider radical solutions to solve this problem.
    According to Deputy Minister Diep Kinh Tan, MARD has directed the Department of Animal Health to strengthen sent staff to direct prevention, disease surveillance cattle, poultry and, in collaboration with local veterinary inspection Check drastic the original quarantine at the quarantine at the wholesale market, thoroughly controlled circulation, transport ... penalties for destruction of native chicken products, does not guarantee hygiene food for chicken to super cheap China does not "exist" in the market. Along with quarantine, control of the market in the market, the Ministry of Agriculture and Rural Development has directed the province focusing on propaganda to raise public awareness to ensure consumers know how to protect yourself, only use the product products were quarantined and checked of veterinary. /.

    Vietnam: Each week, 18 tons of smuggled poultry in Hanoi

    11/5/12:

    Status poultry smuggled from across the border massively smuggled consumption of our country which is the burning of the agricultural sector for many years. Work to prevent illegal chicken is even more difficult when smuggled sophisticated tricks, beyond the control of functional forces. In particular, since September, the state bird smuggling rife than ever.

    According to calculations by the Ministry of Agriculture and Rural Development, the average weekly authorities discovered 15 -18 tons of smuggled poultry in Hanoi. The same smuggled poultry and eggs are about to hatch an unknown phase also complicated with approximately 40% of bird seed smuggled out of control.
     
    Chickens smuggled blatantly Circulation in Hanoi for Ha.
    Chickens smuggled blatantly Circulation in Hanoi for Ha.
     
    -snip-
    100,000 tons chicken smuggled in October.

    Husbandry Department (MARD), only in the first 10 months of this year there were about 100,000 tons of chicken waste (equivalent to 45,000 tonnes of meat) of China illegally imported into Vietnam. Of smuggled chicken is equivalent to the total amount of frozen meat these import quotas same time period. From the beginning of the year also has about 15 - 20 million chickens smuggled types and over 50,000 tons of frozen meat import quotas on Vietnam.

     

    Vietnam: 60% Poultry Smuggled in Lang Son Infected with Influenza Virus A

    At the Steering Committee meeting national bird flu occurred pm 11/12, in Hanoi, Tan Xuan Thanh, deputy director of the Department of Animal Health said 100 percent of waste chicken smuggled across the border infection remains residual antibiotics.

     
     
    Dam Xuan Thanh said that the Chinese chickens discarded from 33000-40000 VND / kg was smuggled across the border only about 15,000 VND / kg. However, notably poultry waste illegally imported into Vietnam through the Ministry of Health inspection results for 100% of all antibiotic residues; including antibiotics banned in Vietnam and very toxic damage.
     
    Force transfer function chickens smuggled destruction.  (Photo: Tran Viet / VNA)
    Force transfer function chickens smuggled destruction. (Photo: Tran Viet / VNA)

    Department of Animal Health has examined samples of smuggled poultry in Lang Son, up to 60% were infected with influenza virus A. In addition, poultry smuggled affect livestock production in the country.Also at the meeting, Pham Van Dong, director of the Department of Animal Health, Ministry of Agriculture and Rural Development said that despite disease animal was a lull, but the risk continues to arise in the near future is very high due to farming activities to increase consumer demand for the end of the year. In addition, the transport, slaughter and consumption increased during the last years, especially in the provinces, localities have the old outbreak and the key areas of livestock ... also increases the risk outbreaks. Currently there are two include: Long An and Soc Trang PRRS less than 21 days.

    Indonesia: MoH Anticipation of Bird Flu Virus Mutation

    December 11, 2012, 21:59 pm

    REPUBLIKA.CO.ID, JAKARTA - Not long ago, hundreds of thousands of ducks owned poultry farmers in Java died suddenly due to Avian influenza virus or better known as H5N1.
    Poultry deaths occurred in the province of East Java, Central Java, Yogyakarta and West Java. It is feared, the virus has attacked humans although until now there has been no reports of people suspect.

    Director General of Disease Control and Environmental Health (P2PL) Ministry of Health, Prof. Dr. Tjandra Yoga Aditama SPP (K) said that a mutation in the influenza virus can indeed occur, and is always the case in many countries. "Yang. now happening is mutated H5N1 bird flu virus that became clade (kind of) new, namely clade 2.3.2. mutations to clade 2.3.2 present in poultry, except in Indonesia also reported in Vietnam, Cambodia, Nepal, India, Bangladesh, Bhutan, Japan, Korea and Hong Kong, "he said. So far, he said, no man in Indonesia who contracted the bird flu virus H5N1 clade that recently. "MoH has done anticipation and alertness for example, to create a circular to the health department in the area, so be aware if there are a large number of poultry deaths," he said. MoH also asked health office in the area to prevent and control the possibility of human contact with poultry deaths in large numbers . "Had it no close human contact with poultry deaths in large numbers, it is done with good handling procedures," he added. Later, he added, need to check dinkes in areas of logistics, coordination and monitoring and reporting when there are developments to watch "Coordination with other ministries as well as absolutely necessary to coordinate with the Ministry of Agriculture to monitor developments, as well as with relevant experts. Also any developments and scientific materials are always deployed to the affected areas, "he said.
    Additionally MoH coordination with international organizations.

    H5N1 Clade 2.3.2.1 A Substantial Pandemic Threat

    Thinking about the bird die off in Indonesia right now, I am reminded of this document.  The editing is mine.

    Spread of Influenza Virus A (H5N1) Clade 2.3.2.1 to Bulgaria in Common Buzzards

    Atanaska Marinova-Petkova, Georgi Georgiev, Patrick Seiler, Daniel Darnell, John Franks, Scott Krauss, Richard J. Webby, and Robert G. Webster


    Abstract

    On March 15, 2010, a highly pathogenic avian influenza virus was isolated from the carcass of a common buzzard (Buteo buteo) in Bulgaria. Phylogenetic analyses of the virus showed a close genetic relationship with influenza virus A (H5N1) clade 2.3.2.1 viruses isolated from wild birds in the Tyva Republic and Mongolia during 2009–2010. Designated A/common buzzard/Bulgaria/38WB/2010, this strain was highly pathogenic in chickens but had low pathogenicity in mice and ferrets and no molecular markers of increased pathogenicity in mammals. The establishment of clade 2.3.2.1 highly pathogenic avian influenza viruses of the H5N1 subtype in wild birds in Europe would increase the likelihood of health threats to humans and poultry in the region.

    Excerpt:

    Migration of common buzzards in different parts of Europe appears to depend on the local climate; buzzards from northern Europe fly to the western Black Sea area during the winter season, whereas buzzards from Bulgaria fly south. Tracking bands belonging to common buzzards from Finland, Romania, and Israel have been found in Bulgaria (39). The buzzard infected with HPAIV (H5N1) in Bulgaria was not banded; however, even if it had been a migrant, the habitat nearest to St. Konstantin and Helena Black Sea Resort that provides different food sources is Batova, with an area of 38,132.8 ha (35). The migration of the common buzzards suggests that these birds are capable of spreading pathogens over long distances.
    Our results show that chickens are highly susceptible to influenza virus A/common buzzard/Bulgaria/38WB/2010 (H5N1) and that the virus is highly pathogenic in them. Mammals appear not to be susceptible. Although buzzards can serve as intermediate hosts of HPAIV (H5N1) between migratory birds and poultry, the lack of gross pathologic findings in the buzzard carcass we examined indicates that the bird died shortly after infection. Thus, in this case, the buzzard could not have served as a reservoir of infection to spread the virus over a long distance. Additionally, the lack of poultry farms within 10 km of the area where the buzzard carcass was found may partially explain why no outbreak occurred.

    Since clade 2.3.2 was first isolated from a dead Chinese pond heron in Hong Kong in 2004, it has spread geographically and evolved genetically. A new fourth-order clade, 2.3.2.1, was recently identified, and A/common buzzard/Bulgaria/38WB/2010 was classified in this clade (8). The question that arises now that clade 2.3.2.1 has spread from Asia to Europe is whether it can cause a scenario similar to that caused by clade 2.2 from 2005–2006, when HPAIV (H5N1) killed millions of birds in Asia, Europe, and Africa. Although no new HPAIV (H5N1)–related events have been reported in Europe since March 2010, some of the aspects of the 2.3.2.1 clade make it difficult to predict the consequences of the clade’s arrival on the continent. For example, this clade is already widely distributed in Asia and is being perpetuated in many wild bird species, which is a prerequisite for long-distance distribution through migration. Wild bird species infected with HPAIV (H5N1) from clade 2.3.2.1 include gray herons, peregrine falcons, and great egrets in Hong Kong; whooper swans, ruby shelducks, and bar-headed geese in Mongolia; and grebes and black-headed gulls in Tyva (8).

     The potential of clade 2.3.2.1 HPAIV (H5N1) to cause an outbreak is heightened because vaccines currently in use do not efficiently protect poultry flocks from a strain of this clade that was recently identified in Vietnam (40). Now that clade 2.3.2.1 has spread to Europe, implementing active surveillance plans in all high-risk areas and monitoring the wild birds in the region will play key roles in early detection of incidences of HPAIV (H5N1) infection and in prevention of outbreaks. The expansion of the geographic distribution of HPAIV (H5N1) in wild birds and poultry and the virus’s repeated interspecies transmission to humans make this virus a substantial pandemic threat. Clade 2.3.2 is widely distributed in Asia, particularly in China, Hong Kong, Korea, Vietnam, Laos, Bangladesh, Nepal, Mongolia, and the Tyva Republic; it is also distributed in eastern Europe, mainly in Romania and Bulgaria (8,9). Tyva is part of the Siberian Federal District of Russia, which is located north of Mongolia. Page created: September 14, 2012 Page last updated: September 14, 2012 Page last reviewed: September 14, 2012

    Indonesia: East Java Reports Dead Ducks

    It's hard to believe that these birds are dropping like flies all within the past 2 weeks.  Yesterday, I made a post about the different regions of Indonesia that have had birds dying recently.  That included Central Java, Yogyakarta, Riau, Bali, Sukabumi West Java.  That post is located here.

    Now we have East Java, and the ducks dying in the past 3 days:

    Kediri : Just in time no more than three days, hundreds of ducks in Kediri, East Java, died suddenly. Provisional estimates, the birds died of the bird flu virus. Department of Kediri farms still awaiting lab results before taking any concrete action on the case. Hundreds of ducks that died suddenly most severe in the village of moor, District Kandat. Every day there are dozens of dead duck. According to the local duck farmers, Sawaji, Tuesday (11/12/2012) classified as sudden death. Within a day, which initially looks healthy ducks suddenly looked ill and soon died. There are no precautions against the spread of the disease. But the local duck farmers took no chances, they malakukan own prevention efforts by spraying disinfectant and vaccination of livestock. chief animal health official farm Kediri, Apriati Dwiwin reveal the presence of disease 'mysterious' is not only the duck population in Kediri risk continues to decrease, but also duck egg production declined. Kandat District is one of the central breeding ducks Kediri. Duck population here reached over 28 thousand heads.
    http://news.liputan6.com/read/466863/ratusan-itik-mendadak-mati-peternak-curigai-flu-burung

    Indonesia: Residents Beware limit hike Latest Bird Flu Mutation

    December 11, 2012

    The head of the team of doctors handling the bird flu virus from Hospital (Hospital) Dr Soetomo urge residents in East Java (East Java) to be alert to bird flu virus mutation latest.

    Vice Chairman of the doctors handling the bird flu Dr RS. Soetomo, Dr. Laksmi Wulandari says latest bird flu virus mutation that might happen. It was, he explained, because of the uniqueness of the bird flu virus than other flu-flu. "This virus can survive in bird feces up to 35 days in water temperatures from 0 to 30 degrees and the nature of any RNA virus where it is easy to mutate," he said, Tuesday (11/12). Thus, according to him, only natural that the bird flu virus had disappeared and then came back with a new mutation.

    fact, in 2011, a researcher in the area of Sidoarjo bird flu, Dr. Ricardo, had found some sparrow bird flu from dirt studied . This means that the mode of transmission of the virus that mutates this is still happening.
    Given the findings of the deaths of hundreds of ducks in Central Java and East Java yesterday, it is the natural cycle of the bird flu virus. The findings of a sparrow that had infected it shows that the dynamic mutation of the virus. Fortunately, finding mutations in virus transmission is still antar unggas [between bird]. "The hope is that the findings are still ducks transmission among birds," explained researcher Tropical Diseases Faculty of Medicine, University of Airlangga. However, he also did not dismiss if the mutation of this virus continues to happen then it does not close the possibility of transmission from poultry to humans. To that end, he appealed to the people to keep doing the safety instructions when found suddenly dead birds, especially in large quantities. Among the burning carcasses of poultry and other birds checked, when infected immediately destroyed by burning.

    hospital Dr. Soetomo last treat patients with suspected bird flu in 2010. However, since the emergence of bird flu patient in 2006, at least five patients who indicated positive bird flu. Of the five patients, three of whom died and two of which were successfully treated.

    Indonesia says it has found more virulent bird flu strain

    11 December 2012
    [English] 
    JAKARTA: Indonesia has identified the bird flu virus that killed hundreds of thousands of ducks in recent weeks as a more virulent type which is new to the country, according to a letter seen Tuesday.

    "We found a highly pathogenic avian influenza sub-type H5N1 (virus) with clade 2.3..."
    the agriculture ministry's veterinary chief Syukur Iwantoro said in the letter obtained by AFP.

    "This clade is a new clade found for the first time in Indonesia, that is very different to the avian influenza found before, which is clade 2.1."

    A clade is a group of organisms, usually species, with a common ancestor.

    A poultry breeders' association had reported the death of more than 300,000 ducks in several provinces on Java island since November to the ministry.

    The veterinary office found the H5N1 virus involved was a different clade to that usually found in Indonesia, said Iwantoro's letter to local government offices and the World Health Organisation (WHO).

    Iwantoro called for further research into whether there had been a genetic shift in the virus previously found in the country, or whether the new strain originated overseas.

    "There is a suspicion that the virus has spread from other countries, possibly from Vietnam or Thailand," Emil Agustiono, secretary of the national commission of zoonosis control that oversees bird flu, told AFP. [They might want to read my blog..it's been in Vietnam...]

    Health officials have told local governments to stop and check motorbikes and pick-up trucks commonly used to transport poultry, to try to reduce the spread of the virus.

    The health ministry has told local offices to be vigilant for more massive poultry deaths, or for deaths of people in the vicinity, its head of communicable disease Tjandra Yoga Aditama told AFP.

    Bird flu typically spreads from birds to humans through direct contact, but experts fear it could mutate into a form that is easily transmissible between humans.

    Indonesia has suffered the world's worst human fatalities from bird flu with 159 deaths since 2003 out of 359 worldwide, according to the WHO. 


    http://www.channelnewsasia.com/stories/afp_asiapacific/view/1242219/1/.html

    Monday, December 10, 2012

    Wisconsin: Seasonal Flu Update Week 48

    I posted yesterday that I could not get Week 48 Report, here.  I have it tonight.

    36 people hospitalized this week
    7 were admitted to ICU and 3 requiring mechanical ventilation (2 were under 4 years old, 1 was 5-17 yrs old)

    They are reporting 0 deaths.
    Yesterday, I posted a reported 4 deaths.  Here is an excerpt from that post with the link:

    Flu season starts out early, deadly

    http://www.jsonline.com/news/wisconsin/flu-season-starts-out-early-deadly-gj7t0ec-181941371.html

    Here is Week 48 from the Wisconsin Department of Health Svcs.

    Respiratory virus surveillance report for the week ending November 30, 2012 week 12-48
    AT-A-GLANCE
    • Respiratory viruses identified this week :
    Influenza (A/H3 and B), Rhino/enterovirus, and parainfluenza were predominant viruses.
    • Influenza-like illness (ILI) activity for this week
    Wisconsin Low
    Wisconsin (CDC level) Minimal
    Western Region Low
    Northern Region Low
    Northeastern Region Low
    Southeastern Region Low
    Southern Region Low
    • ILI activity in Region V of the U.S. (WI, MN, IL, MI, OH, IN) is below baseline levels
    • ILI activity in the U.S. is below baseline levels
    • The Predictive Value Positive (PVP) for rapid influenza tests is: Low but increasing
    (PVP is the probability of disease in a patient with a positive test result)
    • The Predictive Value Negative (PVN) for rapid influenza tests is: High
    (PVN is the probability of not having disease when the test result is negative)
    • Influenza-associated pediatric deaths (October 5, 2012-present)
    Week 12-48 Total to Date
    Wisconsin 0 0
    United States 3 5


    http://www.dhs.wisconsin.gov/communicable/influenza/Reports/2012_48_SurveillanceReport.pdf

    Ontario Canada: Waterloo Seasonal Flu Update: 4 Deaths




    Flu hits hard, killing child and three seniors

    Dec 10 2012 Excerpts: WATERLOO REGION — The flu has killed a healthy child and three elderly residents as this region suffers through the worst influenza outbreak in the province. The child who died was younger than 10 and previously healthy, but did not have a flu shot, according to the local public health department. Three elderly residents who died had underlying health issues. Influenza A contributed to their deaths. “Waterloo Region currently has the highest number of influenza cases in the province, including four influenza-related deaths,” a public health report states. The latest figures show 70 confirmed flu cases in the region, representing 27 per cent of 264 flu cases across Ontario. Based on population, the local flu rate is seven times higher than the provincial average. The hospitalization rate is three times higher than the provincial average. Influenza A is blamed for 12 recent outbreaks in local facilities including hospitals, nursing and retirement homes. At least two other Ontario residents have died of flu since the influenza season began in late August. Full article: